Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bama/tama family outer membrane protein | E5284_RS10725 | Not Available | Positive | 2261694 - 2262824 | 42346.5 |
| duf4056 domain-containing protein | E5284_RS10730 | Not Available | Positive | 2262825 - 2263931 | 41520.9 |
| translesion error-prone dna polymerase v autoproteolytic subunit | E5284_RS10735 | Not Available | Positive | 2264139 - 2264558 | 15065.2 |
| y-family dna polymerase | E5284_RS10740 | Not Available | Positive | 2264561 - 2265823 | 47205.8 |
| metal/formaldehyde-sensitive transcriptional repressor | E5284_RS10745 | Not Available | Positive | 2265992 - 2266267 | 10142.5 |
| s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase | E5284_RS10750 | Not Available | Positive | 2266300 - 2267418 | 39301.4 |
| methyl-accepting chemotaxis protein | E5284_RS10760 | Not Available | Positive | 2267588 - 2269276 | 60552.1 |
| lysr substrate-binding domain-containing protein | E5284_RS10765 | Not Available | Negative | 2269323 - 2270246 | 33480.9 |
| manganese-dependent inorganic pyrophosphatase | E5284_RS10770 | Not Available | Positive | 2270467 - 2271369 | 33320.1 |
| hypothetical protein | E5284_RS10775 | Not Available | Negative | 2271950 - 2272432 | 18694.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

