Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribokinase | E5284_RS10675 | Not Available | Positive | 2251028 - 2251939 | 32175.6 |
| d-ribose pyranase | E5284_RS10680 | Not Available | Positive | 2251969 - 2252469 | 18705.2 |
| sugar porter family mfs transporter | E5284_RS10685 | Not Available | Positive | 2252591 - 2253973 | 51190.8 |
| hypothetical protein | E5284_RS10690 | Not Available | Positive | 2254031 - 2255138 | 41723.1 |
| sugar phosphate isomerase/epimerase family protein | E5284_RS10695 | Not Available | Positive | 2255135 - 2256034 | 33147.2 |
| cytochrome b561 | E5284_RS10700 | Not Available | Positive | 2256196 - 2256726 | 20153.8 |
| dmt family transporter | E5284_RS10705 | Not Available | Negative | 2256776 - 2257684 | 32836.4 |
| mechanosensitive ion channel family protein | E5284_RS10710 | Not Available | Positive | 2257996 - 2259612 | 60204.4 |
| bama/tama family outer membrane protein | E5284_RS10715 | Not Available | Positive | 2259609 - 2260724 | 40812.1 |
| porin family protein | E5284_RS10720 | Not Available | Positive | 2260756 - 2261694 | 35010.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

