Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphatase pap2/dual specificity phosphatase family protein | E5284_RS10625 | Not Available | Positive | 2238770 - 2240074 | 49443.7 |
| hypothetical protein | E5284_RS10630 | Not Available | Positive | 2240050 - 2240451 | 15277.8 |
| hypothetical protein | E5284_RS10635 | Not Available | Positive | 2240535 - 2240726 | 8054.94 |
| fmn-dependent nadh-azoreductase | E5284_RS10640 | Not Available | Negative | 2240777 - 2241382 | 21685.9 |
| atp-dependent rna helicase hrpa | E5284_RS10645 | Not Available | Positive | 2241584 - 2245486 | 148898.0 |
| ydcf family protein | E5284_RS10650 | Not Available | Positive | 2245609 - 2246406 | 29284.8 |
| aldehyde dehydrogenase | E5284_RS10655 | Not Available | Positive | 2246606 - 2248045 | 52283.9 |
| alpha/beta hydrolase | E5284_RS10660 | Not Available | Negative | 2248088 - 2249014 | 33563.1 |
| helix-turn-helix transcriptional regulator | E5284_RS10665 | Not Available | Negative | 2249123 - 2250013 | 34886.8 |
| deoxyribose-phosphate aldolase | E5284_RS10670 | Not Available | Positive | 2250255 - 2250956 | 25524.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

