Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2272 domain-containing protein | E5284_RS10575 | Not Available | Positive | 2229185 - 2230564 | 51544.0 |
| hypothetical protein | E5284_RS10580 | Not Available | Positive | 2230568 - 2231020 | 16893.3 |
| hypothetical protein | E5284_RS10585 | Not Available | Positive | 2231031 - 2231366 | 12400.1 |
| ydbh family protein | E5284_RS10590 | Not Available | Positive | 2231598 - 2234237 | 96914.2 |
| ynbe family lipoprotein | E5284_RS10595 | Not Available | Positive | 2234234 - 2234425 | 6943.72 |
| ydbl family protein | E5284_RS10600 | Not Available | Positive | 2234433 - 2234756 | 11632.1 |
| cdp-alcohol phosphatidyltransferase family protein | E5284_RS10605 | Not Available | Positive | 2234863 - 2235468 | 22249.0 |
| phosphatidate cytidylyltransferase | E5284_RS10610 | Not Available | Positive | 2235465 - 2236382 | 34023.0 |
| lysophospholipid acyltransferase family protein | E5284_RS10615 | Not Available | Positive | 2236386 - 2237027 | 24163.0 |
| bifunctional alpha/beta hydrolase/class i sam-dependent methyltransferase | E5284_RS10620 | Not Available | Positive | 2237020 - 2238780 | 65199.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

