Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS10195 | Not Available | Positive | 2164911 - 2165093 | 6665.15 |
| porin ompc | E5284_RS10525 | Not Available | Negative | 2217624 - 2218760 | 41368.1 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | E5284_RS10530 | Not Available | Negative | 2219123 - 2222647 | 128744.0 |
| duf333 domain-containing protein | E5284_RS10540 | Not Available | Positive | 2222922 - 2223188 | 8695.49 |
| heat shock protein hslj | E5284_RS10545 | Not Available | Negative | 2223202 - 2223621 | 15091.5 |
| d-lactate dehydrogenase | E5284_RS10550 | Not Available | Negative | 2223734 - 2224723 | 36390.7 |
| hypothetical protein | E5284_RS10555 | Not Available | Positive | 2225339 - 2225551 | 7919.67 |
| gil family class a beta-lactamase | E5284_RS10560 | Not Available | Negative | 2225708 - 2226568 | 31384.9 |
| alpha/beta hydrolase | E5284_RS10565 | Not Available | Negative | 2226778 - 2227884 | 40954.5 |
| hypothetical protein | E5284_RS10570 | Not Available | Positive | 2228239 - 2229150 | 32928.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

