Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2534 family protein | E5284_RS10145 | Not Available | Positive | 2153780 - 2154040 | 9356.91 |
| universal stress protein uspe | E5284_RS10150 | Not Available | Negative | 2154089 - 2155036 | 35660.0 |
| aph(3')-i family aminoglycoside o-phosphotransferase | E5284_RS10155 | Not Available | Negative | 2155239 - 2156054 | 30572.4 |
| fumarate/nitrate reduction transcriptional regulator fnr | E5284_RS10160 | Not Available | Negative | 2156245 - 2156997 | 27898.9 |
| methylated-dna--[protein]-cysteine s-methyltransferase | E5284_RS10165 | Not Available | Negative | 2157192 - 2157707 | 18897.7 |
| dna endonuclease smra | E5284_RS10170 | Not Available | Positive | 2157932 - 2158495 | 21159.1 |
| ggdef domain-containing protein | E5284_RS10175 | Not Available | Negative | 2158507 - 2159739 | 46226.7 |
| putative bifunctional diguanylate cyclase/phosphodiesterase | E5284_RS10180 | Not Available | Negative | 2159764 - 2161920 | 79328.6 |
| methyl-accepting chemotaxis protein | E5284_RS10185 | Not Available | Positive | 2162338 - 2163504 | 42248.6 |
| zinc transporter zntb | E5284_RS10190 | Not Available | Positive | 2163653 - 2164636 | 36659.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

