Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiol peroxidase | E5284_RS10090 | Not Available | Negative | 2145695 - 2146201 | 17780.3 |
| l-ala-d/l-glu epimerase | E5284_RS10095 | Not Available | Positive | 2146316 - 2147281 | 34553.6 |
| murein tripeptide amidase mpaa | E5284_RS10100 | Not Available | Negative | 2147256 - 2147984 | 26456.2 |
| murein tripeptide abc transporter substrate-binding protein mppa | E5284_RS10105 | Not Available | Positive | 2148169 - 2149782 | 60033.3 |
| marr family winged helix-turn-helix transcriptional regulator | E5284_RS10110 | Not Available | Negative | 2149825 - 2150385 | 21256.9 |
| glutaredoxin family protein | E5284_RS10115 | Not Available | Positive | 2150501 - 2150731 | 8071.78 |
| rho-binding antiterminator | E5284_RS10120 | Not Available | Positive | 2150797 - 2151078 | 10588.7 |
| deor/glpr family dna-binding transcription regulator | E5284_RS10125 | Not Available | Negative | 2151095 - 2151865 | 27552.2 |
| voc family protein | E5284_RS10130 | Not Available | Positive | 2151970 - 2152353 | 14003.7 |
| mechanosensitive ion channel family protein | E5284_RS10140 | Not Available | Negative | 2152499 - 2153530 | 38608.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

