Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein sapa | E5284_RS10040 | Not Available | Negative | 2136525 - 2138168 | 61380.0 |
| phage shock protein operon transcriptional activator | E5284_RS10045 | Not Available | Negative | 2138281 - 2139270 | 37306.0 |
| phage shock protein pspa | E5284_RS10050 | Not Available | Positive | 2139426 - 2140094 | 25548.3 |
| envelope stress response membrane protein pspb | E5284_RS10055 | Not Available | Positive | 2140149 - 2140373 | 8876.68 |
| envelope stress response membrane protein pspc | E5284_RS10060 | Not Available | Positive | 2140373 - 2140732 | 13351.4 |
| phage shock protein pspd | E5284_RS10065 | Not Available | Positive | 2140741 - 2140962 | 8171.48 |
| thiosulfate sulfurtransferase pspe | E5284_RS10070 | Not Available | Positive | 2141039 - 2141356 | 11651.1 |
| ycjx family protein | E5284_RS10075 | Not Available | Positive | 2141499 - 2142896 | 52518.3 |
| ycjf family protein | E5284_RS10080 | Not Available | Positive | 2142893 - 2143954 | 39390.5 |
| transcriptional regulator tyrr | E5284_RS10085 | Not Available | Positive | 2144101 - 2145645 | 57745.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

