Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS09985 | Not Available | Negative | 2124839 - 2125030 | 6997.46 |
| cyclic di-gmp phosphodiesterase | E5284_RS09995 | Not Available | Negative | 2125205 - 2127196 | 74939.4 |
| exoribonuclease ii | E5284_RS10000 | Not Available | Negative | 2127458 - 2129392 | 72450.5 |
| carboxymuconolactone decarboxylase family protein | E5284_RS10005 | Not Available | Negative | 2129482 - 2130639 | 42819.1 |
| enoyl-acp reductase fabi | E5284_RS10010 | Not Available | Negative | 2130857 - 2131645 | 27910.6 |
| eal domain-containing protein | E5284_RS10015 | Not Available | Positive | 2132155 - 2132844 | 25751.3 |
| peptide abc transporter atp-binding protein sapf | E5284_RS10020 | Not Available | Negative | 2132886 - 2133692 | 30593.5 |
| peptide abc transporter atp-binding protein sapd | E5284_RS10025 | Not Available | Negative | 2133694 - 2134686 | 37688.9 |
| peptide abc transporter permease sapc | E5284_RS10030 | Not Available | Negative | 2134686 - 2135576 | 31532.0 |
| peptide abc transporter permease sapb | E5284_RS10035 | Not Available | Negative | 2135563 - 2136528 | 36071.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

