Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS23155 | Not Available | Positive | 2115709 - 2115879 | 6393.11 |
| aconitate hydratase acna | E5284_RS09940 | Not Available | Positive | 2116223 - 2118898 | 97588.7 |
| gtp cyclohydrolase ii | E5284_RS09945 | Not Available | Negative | 2118963 - 2119553 | 21636.1 |
| phosphatidylglycerophosphatase b | E5284_RS09950 | Not Available | Positive | 2119751 - 2120515 | 29300.4 |
| lapa family protein | E5284_RS09955 | Not Available | Positive | 2120665 - 2120973 | 11360.2 |
| lipopolysaccharide assembly protein lapb | E5284_RS09960 | Not Available | Positive | 2120980 - 2122149 | 44576.6 |
| orotidine-5'-phosphate decarboxylase | E5284_RS09965 | Not Available | Positive | 2122336 - 2123073 | 26311.6 |
| stress response translation initiation inhibitor ycih | E5284_RS09970 | Not Available | Positive | 2123074 - 2123400 | 11469.0 |
| osmotically-inducible lipoprotein osmb | E5284_RS09975 | Not Available | Negative | 2123504 - 2123722 | 6887.43 |
| dna-binding transcriptional regulator ycit | E5284_RS09980 | Not Available | Negative | 2123990 - 2124742 | 27669.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

