Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase rnm | E5284_RS09890 | Not Available | Positive | 2105571 - 2106449 | 32638.9 |
| l-threonylcarbamoyladenylate synthase | E5284_RS09895 | Not Available | Positive | 2106446 - 2107066 | 23114.0 |
| 23s rrna pseudouridine(2605) synthase rlub | E5284_RS09900 | Not Available | Positive | 2107167 - 2108042 | 32756.4 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | E5284_RS09905 | Not Available | Negative | 2108126 - 2108716 | 21784.0 |
| ycik family oxidoreductase | E5284_RS09910 | Not Available | Negative | 2108713 - 2109474 | 27783.4 |
| protease sohb | E5284_RS09915 | Not Available | Positive | 2109696 - 2110742 | 39188.8 |
| ycin family protein | E5284_RS09920 | Not Available | Negative | 2110851 - 2111102 | 9376.23 |
| type i dna topoisomerase | E5284_RS09925 | Not Available | Positive | 2111502 - 2114099 | 97361.0 |
| hth-type transcriptional regulator cysb | E5284_RS09930 | Not Available | Positive | 2114295 - 2115269 | 36103.2 |
| ymia family putative membrane protein | E5284_RS09935 | Not Available | Positive | 2115566 - 2115706 | 5315.65 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

