Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS23285 | Not Available | Negative | 2090239 - 2090325 | 3294.01 |
| outer membrane protein ompw | E5284_RS09845 | Not Available | Positive | 2090606 - 2091244 | 23032.2 |
| autotransporter outer membrane beta-barrel domain-containing protein | E5284_RS09850 | Not Available | Positive | 2092411 - 2096751 | 149030.0 |
| hypothetical protein | E5284_RS09855 | Not Available | Positive | 2096880 - 2097155 | 9963.86 |
| ggdef domain-containing protein | E5284_RS09860 | Not Available | Positive | 2097257 - 2098729 | 55099.8 |
| tryptophan synthase subunit alpha | E5284_RS09865 | Not Available | Negative | 2098763 - 2099569 | 28678.5 |
| tryptophan synthase subunit beta | E5284_RS09870 | Not Available | Negative | 2099569 - 2100762 | 42974.7 |
| bifunctional indole-3-glycerol-phosphate synthase trpc/phosphoribosylanthranilate isomerase trpf | E5284_RS09875 | Not Available | Negative | 2100773 - 2102134 | 49537.1 |
| bifunctional anthranilate synthase glutamate amidotransferase component trpg/anthranilate phosphoribosyltransferase trpd | E5284_RS09880 | Not Available | Negative | 2102135 - 2103730 | 56921.5 |
| anthranilate synthase component 1 | E5284_RS09885 | Not Available | Negative | 2103730 - 2105292 | 57542.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

