Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ion transporter | E5284_RS09800 | Not Available | Positive | 2083173 - 2084009 | 32004.7 |
| hi1450 family dsdna-mimic protein | E5284_RS09805 | Not Available | Negative | 2084045 - 2084374 | 12717.7 |
| cardiolipin synthase | E5284_RS09810 | Not Available | Negative | 2084409 - 2085869 | 54717.3 |
| yciy family protein | E5284_RS09815 | Not Available | Positive | 2086012 - 2086185 | 7042.72 |
| hypothetical protein | E5284_RS23150 | Not Available | Positive | 2086391 - 2086552 | 5666.88 |
| ycii family protein | E5284_RS09820 | Not Available | Negative | 2086997 - 2087293 | 10550.5 |
| tonb system transport protein tonb | E5284_RS09825 | Not Available | Positive | 2087509 - 2088234 | 26184.7 |
| acyl-coa thioester hydrolase ycia | E5284_RS09830 | Not Available | Negative | 2088315 - 2088716 | 14323.4 |
| septation protein a | E5284_RS09835 | Not Available | Negative | 2088872 - 2089411 | 20735.1 |
| ycic family protein | E5284_RS09840 | Not Available | Negative | 2089467 - 2090210 | 26544.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

