Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rrf2 family transcriptional regulator | E5284_RS13410 | Not Available | Positive | 2794507 - 2794833 | 11518.8 |
| Rece | E5284_RS13415 | Not Available | Positive | 2794975 - 2797446 | 92507.5 |
| Attr | Not Available | Not Available | Positive | 2797371 - 2797382 | Not Available |
| excisionase family protein | E5284_RS13420 | Not Available | Positive | 2797513 - 2797728 | 8370.02 |
| Putative bacteriophage integrase | E5284_RS13425 | Not Available | Positive | 2797728 - 2799014 | 48254.6 |
| Hybrid sensor histidine kinase - response regulator | E5284_RS13430 | Not Available | Positive | 2799088 - 2799759 | 25447.6 |
| Attl | Not Available | Not Available | Positive | 3794173 - 3794188 | Not Available |
| Dna primase | E5284_RS18180 | Not Available | Negative | 3794469 - 3796802 | 84559.0 |
| Hypothetical protein | E5284_RS18185 | Not Available | Negative | 3796814 - 3797134 | 11690.3 |
| hypothetical protein | E5284_RS18190 | Not Available | Negative | 3797131 - 3797358 | 8496.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

