Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrate abc transporter permease | E5284_RS09640 | Not Available | Positive | 2044225 - 2045100 | 32104.2 |
| abc transporter atp-binding protein | E5284_RS09645 | Not Available | Positive | 2045110 - 2045898 | 29030.4 |
| nitrite reductase large subunit nirb | E5284_RS09650 | Not Available | Positive | 2045908 - 2049975 | 146928.0 |
| nitrate reductase | E5284_RS09655 | Not Available | Positive | 2049972 - 2052572 | 93900.3 |
| ycho/ychp family invasin | E5284_RS09660 | Not Available | Positive | 2052676 - 2054061 | 51257.0 |
| two-component system response regulator narl | E5284_RS09665 | Not Available | Negative | 2054081 - 2054731 | 23849.2 |
| nitrate/nitrite two-component system sensor histidine kinase narx | E5284_RS09670 | Not Available | Negative | 2054724 - 2056520 | 67088.8 |
| nark family nitrate/nitrite mfs transporter | E5284_RS09680 | Not Available | Positive | 2056860 - 2058251 | 49751.3 |
| nitrate reductase subunit alpha | E5284_RS09685 | Not Available | Positive | 2058767 - 2062510 | 140606.0 |
| nitrate reductase subunit beta | E5284_RS09690 | Not Available | Positive | 2062507 - 2064045 | 57802.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

