Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide chain release factor n(5)-glutamine methyltransferase | E5284_RS09590 | Not Available | Positive | 2035348 - 2036181 | 30410.2 |
| invasion regulator sirb2 | E5284_RS09595 | Not Available | Positive | 2036178 - 2036570 | 14587.6 |
| invasion regulator sirb1 | E5284_RS09600 | Not Available | Positive | 2036573 - 2037382 | 30798.8 |
| 3-deoxy-8-phosphooctulonate synthase | E5284_RS09605 | Not Available | Positive | 2037418 - 2038272 | 30710.1 |
| sodium-potassium/proton antiporter chaa | E5284_RS09610 | Not Available | Negative | 2038378 - 2039478 | 39182.9 |
| gamma-glutamylcyclotransferase | E5284_RS09615 | Not Available | Positive | 2039877 - 2040572 | 25403.8 |
| duf1883 domain-containing protein | E5284_RS09620 | Not Available | Negative | 2040620 - 2040865 | 9082.8 |
| dsre/dsrf/tusd sulfur relay family protein | E5284_RS09625 | Not Available | Negative | 2041129 - 2041482 | 12682.5 |
| nitrate regulatory protein nasr | E5284_RS09630 | Not Available | Positive | 2041556 - 2042737 | 44577.6 |
| cmpa/nrta family abc transporter substrate-binding protein | E5284_RS09635 | Not Available | Positive | 2042964 - 2044223 | 46030.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

