Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | E5284_RS09540 | Not Available | Negative | 2023974 - 2024795 | 30426.9 |
| feccd family abc transporter permease | E5284_RS09545 | Not Available | Negative | 2024792 - 2025856 | 36954.3 |
| abc transporter substrate-binding protein | E5284_RS09550 | Not Available | Negative | 2025922 - 2026974 | 38039.4 |
| gnat family n-acetyltransferase | E5284_RS09555 | Not Available | Negative | 2027619 - 2028161 | 21296.4 |
| c4-dicarboxylic acid transporter daua | E5284_RS09560 | Not Available | Negative | 2028268 - 2029947 | 59388.6 |
| ribose-phosphate diphosphokinase | E5284_RS09565 | Not Available | Negative | 2030072 - 2031019 | 34218.3 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | E5284_RS09570 | Not Available | Negative | 2031286 - 2032137 | 30856.2 |
| lipoprotein insertase outer membrane protein lolb | E5284_RS09575 | Not Available | Negative | 2032134 - 2032757 | 23616.2 |
| glutamyl-trna reductase | E5284_RS09580 | Not Available | Positive | 2032969 - 2034225 | 46169.2 |
| peptide chain release factor 1 | E5284_RS09585 | Not Available | Positive | 2034266 - 2035348 | 40535.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

