Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | E5284_RS09490 | Not Available | Negative | 2014990 - 2015901 | 34483.3 |
| alkene reductase | E5284_RS09495 | Not Available | Positive | 2016004 - 2017101 | 39823.2 |
| yebc/pmpr family dna-binding transcriptional regulator | E5284_RS09500 | Not Available | Negative | 2017334 - 2018050 | 25746.2 |
| redox-regulated atpase ychf | E5284_RS09505 | Not Available | Negative | 2018552 - 2019646 | 39684.4 |
| aminoacyl-trna hydrolase | E5284_RS09510 | Not Available | Negative | 2019762 - 2020346 | 21140.6 |
| stress-induced protein ychh | E5284_RS09515 | Not Available | Positive | 2020621 - 2020899 | 10407.8 |
| cytochrome c1 | E5284_RS09520 | Not Available | Negative | 2020946 - 2021761 | 30196.0 |
| cytochrome b | E5284_RS09525 | Not Available | Negative | 2021766 - 2022938 | 44680.4 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | E5284_RS09530 | Not Available | Negative | 2022940 - 2023488 | 19316.9 |
| pseudoazurin | E5284_RS09535 | Not Available | Negative | 2023515 - 2023955 | 16245.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

