Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spore coat protein u domain-containing protein | E5284_RS09435 | Not Available | Negative | 2001927 - 2002895 | 33567.6 |
| fimbria/pilus outer membrane usher protein | E5284_RS09440 | Not Available | Negative | 2002909 - 2005188 | 81113.0 |
| molecular chaperone | E5284_RS09445 | Not Available | Negative | 2005244 - 2005966 | 25874.3 |
| spore coat u domain-containing protein | E5284_RS09450 | Not Available | Negative | 2005981 - 2006511 | 17607.5 |
| hypothetical protein | E5284_RS09460 | Not Available | Positive | 2007993 - 2010761 | 94043.9 |
| pentapeptide mxkdx repeat protein | E5284_RS09465 | Not Available | Negative | 2010891 - 2011136 | 9058.18 |
| molybdopterin-dependent oxidoreductase | E5284_RS09470 | Not Available | Negative | 2011165 - 2011926 | 28511.0 |
| cytochrome b/b6 domain-containing protein | E5284_RS09475 | Not Available | Negative | 2011937 - 2012551 | 23314.7 |
| response regulator transcription factor | E5284_RS09480 | Not Available | Positive | 2012695 - 2013408 | 27209.8 |
| atp-binding protein | E5284_RS09485 | Not Available | Positive | 2013411 - 2014889 | 54566.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

