Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| potassium/proton antiporter | E5284_RS09385 | Not Available | Negative | 1990290 - 1992023 | 61979.7 |
| muramoyltetrapeptide carboxypeptidase | E5284_RS09390 | Not Available | Negative | 1992121 - 1993035 | 33096.7 |
| membrane-bound lytic murein transglycosylase emta | E5284_RS09395 | Not Available | Positive | 1993134 - 1993745 | 22229.8 |
| flagellar brake protein | E5284_RS09400 | Not Available | Negative | 1993757 - 1994491 | 27884.6 |
| glsb/yeaq/ymge family stress response membrane protein | E5284_RS09405 | Not Available | Positive | 1994690 - 1994944 | 8669.21 |
| alpha,alpha-trehalase | E5284_RS09410 | Not Available | Negative | 1994993 - 1996681 | 62799.0 |
| dihydroxyacetone kinase phosphoryl donor subunit dham | E5284_RS09415 | Not Available | Negative | 1996853 - 1998283 | 50790.1 |
| dihydroxyacetone kinase subunit dhal | E5284_RS09420 | Not Available | Negative | 1998294 - 1998926 | 22879.4 |
| dihydroxyacetone kinase subunit dhak | E5284_RS09425 | Not Available | Negative | 1998938 - 2000008 | 38290.7 |
| glu/leu/phe/val family dehydrogenase | E5284_RS09430 | Not Available | Negative | 2000334 - 2001608 | 46070.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

