Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ycgl domain-containing protein | E5284_RS09335 | Not Available | Positive | 1980634 - 1980927 | 11151.6 |
| fumarylacetoacetate hydrolase family protein | E5284_RS09340 | Not Available | Positive | 1980997 - 1981656 | 23767.7 |
| ycgn family cysteine cluster protein | E5284_RS09345 | Not Available | Positive | 1981749 - 1982195 | 17300.4 |
| duf1971 domain-containing protein | E5284_RS09350 | Not Available | Negative | 1982225 - 1982566 | 12835.0 |
| disulfide bond formation protein dsbb | E5284_RS09355 | Not Available | Negative | 1982677 - 1983207 | 20016.2 |
| na(+)/h(+) antiporter nhab | E5284_RS09360 | Not Available | Negative | 1983349 - 1984890 | 56585.7 |
| fatty acid metabolism transcriptional regulator fadr | E5284_RS09365 | Not Available | Positive | 1985128 - 1985847 | 26990.2 |
| spovr family protein | E5284_RS09370 | Not Available | Negative | 1985950 - 1987482 | 60705.9 |
| d-amino acid dehydrogenase | E5284_RS09375 | Not Available | Positive | 1987805 - 1989103 | 47512.1 |
| catabolic alanine racemase dadx | E5284_RS09380 | Not Available | Positive | 1989116 - 1990186 | 38678.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

