Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Phage major capsid protein | E5284_RS03200 | Not Available | Positive | 639176 - 640330 | 42507.3 |
| Prohead protease | E5284_RS03205 | Not Available | Positive | 640375 - 640935 | 21418.2 |
| Portal protein | E5284_RS03210 | Not Available | Positive | 640937 - 642166 | 46106.6 |
| Head-tail connector ii | E5284_RS03215 | Not Available | Positive | 642163 - 642501 | 12355.8 |
| Head-tail connector ii | E5284_RS03220 | Not Available | Positive | 642494 - 642784 | 10997.1 |
| Hypothetical protein | E5284_RS03225 | Not Available | Positive | 642785 - 643228 | 17005.0 |
| Terminase small subunit | E5284_RS03230 | Not Available | Positive | 643368 - 643724 | 13168.6 |
| Terminase large subunit | E5284_RS03235 | Not Available | Positive | 643708 - 645369 | 62481.4 |
| hypothetical protein | E5284_RS03240 | Not Available | Positive | 645604 - 646182 | 21932.5 |
| hypothetical protein | E5284_RS23110 | Not Available | Negative | 646250 - 646393 | 4831.25 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

