Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protease htpx | E5284_RS09185 | Not Available | Positive | 1951789 - 1952670 | 31887.3 |
| mfs transporter | E5284_RS09190 | Not Available | Negative | 1952720 - 1954093 | 48058.4 |
| dna-binding transcriptional regulator kdgr | E5284_RS09195 | Not Available | Positive | 1954269 - 1955060 | 30150.3 |
| yobh family protein | E5284_RS09200 | Not Available | Negative | 1955174 - 1955413 | 8315.43 |
| phop/phoq regulator mgrb | E5284_RS09205 | Not Available | Positive | 1955577 - 1955720 | 5601.27 |
| yebo family protein | E5284_RS09210 | Not Available | Positive | 1955795 - 1956076 | 10434.6 |
| duf2627 domain-containing protein | E5284_RS09215 | Not Available | Positive | 1956716 - 1956859 | 5238.46 |
| transcription antiterminator/rna stability regulator cspe | E5284_RS09220 | Not Available | Positive | 1956872 - 1957081 | 7402.76 |
| peptidoglycan glycosyltransferase ftsi | E5284_RS09225 | Not Available | Positive | 1957301 - 1959046 | 63062.8 |
| 23s rrna (guanine(745)-n(1))-methyltransferase | E5284_RS09230 | Not Available | Positive | 1959110 - 1959919 | 29772.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

