Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yeby family protein | E5284_RS09135 | Not Available | Positive | 1940709 - 1941047 | 12215.0 |
| protein-serine/threonine phosphatase | E5284_RS09140 | Not Available | Positive | 1941461 - 1942102 | 24597.4 |
| yebw family protein | E5284_RS09145 | Not Available | Negative | 1942103 - 1942294 | 7237.49 |
| yebv family protein | E5284_RS09150 | Not Available | Negative | 1942397 - 1942633 | 8794.29 |
| 16s rrna (cytosine(1407)-c(5))-methyltransferase rsmf | E5284_RS09155 | Not Available | Negative | 1942734 - 1944122 | 51396.3 |
| pqib family protein | E5284_RS09160 | Not Available | Negative | 1944234 - 1946867 | 94838.9 |
| membrane integrity lipid transport subunit yebs | E5284_RS09165 | Not Available | Negative | 1946836 - 1948119 | 48168.4 |
| gaf domain-containing protein | E5284_RS09170 | Not Available | Positive | 1948248 - 1948745 | 18094.7 |
| rna chaperone proq | E5284_RS09175 | Not Available | Positive | 1948842 - 1949528 | 25411.4 |
| carboxy terminal-processing peptidase | E5284_RS09180 | Not Available | Positive | 1949548 - 1951596 | 76410.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

