Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate-dependent phosphoribosylglycinamide formyltransferase | E5284_RS09085 | Not Available | Negative | 1932653 - 1933831 | 42368.1 |
| dna damage-inducible protein yebg | E5284_RS09090 | Not Available | Positive | 1933963 - 1934253 | 10691.5 |
| protein yebf | E5284_RS09095 | Not Available | Positive | 1934373 - 1934726 | 12954.5 |
| tellurite resistance terb family protein | E5284_RS09100 | Not Available | Positive | 1934820 - 1935479 | 23756.4 |
| oligopeptidase b | E5284_RS09105 | Not Available | Positive | 1935566 - 1937626 | 78522.0 |
| exodeoxyribonuclease x | E5284_RS09110 | Not Available | Negative | 1937623 - 1938285 | 25090.4 |
| carbon-nitrogen hydrolase family protein | E5284_RS09115 | Not Available | Negative | 1938309 - 1938965 | 24070.0 |
| dna polymerase iii subunit theta | E5284_RS09120 | Not Available | Negative | 1939072 - 1939296 | 8548.38 |
| copc domain-containing protein yoba | E5284_RS09125 | Not Available | Positive | 1939441 - 1939815 | 13123.5 |
| copper homeostasis membrane protein copd | E5284_RS09130 | Not Available | Positive | 1939820 - 1940692 | 32462.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

