Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sirohydrochlorin cobaltochelatase | E5284_RS08985 | Not Available | Positive | 1915097 - 1915891 | 28952.9 |
| cobalt-factor ii c(20)-methyltransferase | E5284_RS08990 | Not Available | Positive | 1915888 - 1916601 | 25920.2 |
| cobalt ecf transporter s component cbim | E5284_RS08995 | Not Available | Positive | 1916598 - 1917335 | 26432.6 |
| energy-coupling factor abc transporter substrate-binding protein | E5284_RS09000 | Not Available | Positive | 1917338 - 1917619 | 10289.4 |
| energy-coupling factor abc transporter transmembrane protein | E5284_RS09005 | Not Available | Positive | 1917606 - 1918283 | 26099.9 |
| energy-coupling factor abc transporter atp-binding protein | E5284_RS09010 | Not Available | Positive | 1918292 - 1919107 | 30136.3 |
| cobyric acid synthase | E5284_RS09015 | Not Available | Positive | 1919104 - 1920624 | 55316.7 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | E5284_RS09020 | Not Available | Positive | 1920621 - 1921166 | 20036.0 |
| adenosylcobinamide-gdp ribazoletransferase | E5284_RS09025 | Not Available | Positive | 1921163 - 1921906 | 26315.4 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | E5284_RS09030 | Not Available | Positive | 1921932 - 1922996 | 36274.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

