Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobyrinate a,c-diamide synthase | E5284_RS08935 | Not Available | Positive | 1906505 - 1907884 | 49740.6 |
| adenosylcobinamide-phosphate synthase cbib | E5284_RS08940 | Not Available | Positive | 1907881 - 1908840 | 35305.2 |
| cobalt-precorrin-8 methylmutase | E5284_RS08945 | Not Available | Positive | 1908851 - 1909483 | 22861.5 |
| cobalt-precorrin-5b (c(1))-methyltransferase cbid | E5284_RS08950 | Not Available | Positive | 1909480 - 1910628 | 41266.1 |
| cobalt-precorrin-7 (c(5))-methyltransferase | E5284_RS08955 | Not Available | Positive | 1910613 - 1911218 | 22031.8 |
| decarboxylating cobalt-precorrin-6b (c(15))-methyltransferase | E5284_RS08960 | Not Available | Positive | 1911208 - 1911777 | 20621.1 |
| cobalt-precorrin-4 methyltransferase | E5284_RS08965 | Not Available | Positive | 1911770 - 1912543 | 28440.9 |
| cobalt-precorrin 5a hydrolase | E5284_RS08970 | Not Available | Positive | 1912524 - 1913579 | 38104.4 |
| precorrin-3b c(17)-methyltransferase | E5284_RS08975 | Not Available | Positive | 1913579 - 1914304 | 25883.9 |
| cobalt-precorrin-6a reductase | E5284_RS08980 | Not Available | Positive | 1914301 - 1915086 | 28292.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

