Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| propanediol utilization microcompartment protein pduj | E5284_RS08885 | Not Available | Negative | 1896982 - 1897257 | 9054.02 |
| glycerol dehydratase reactivase beta/small subunit family protein | E5284_RS08890 | Not Available | Negative | 1897277 - 1897627 | 12826.4 |
| diol dehydratase reactivase subunit alpha | E5284_RS08895 | Not Available | Negative | 1897617 - 1899449 | 64414.3 |
| propanediol dehydratase small subunit pdue | E5284_RS08900 | Not Available | Negative | 1899465 - 1899983 | 19262.8 |
| propanediol dehydratase medium subunit pdud | E5284_RS08905 | Not Available | Negative | 1899998 - 1900672 | 24341.4 |
| propanediol dehydratase large subunit pduc | E5284_RS08910 | Not Available | Negative | 1900683 - 1902347 | 60286.8 |
| propanediol utilization microcompartment protein pdub | E5284_RS08915 | Not Available | Negative | 1902366 - 1903178 | 28076.6 |
| propanediol utilization microcompartment protein pdua | E5284_RS08920 | Not Available | Negative | 1903178 - 1903459 | 9464.63 |
| propanediol diffusion facilitator pduf | E5284_RS08925 | Not Available | Positive | 1903985 - 1904794 | 28260.0 |
| transcriptional regulator pocr | E5284_RS08930 | Not Available | Positive | 1904999 - 1905910 | 34203.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

