Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| propanediol utilization microcompartment protein pduu | E5284_RS08835 | Not Available | Negative | 1889315 - 1889665 | 12476.3 |
| propanediol utilization microcompartment protein pdut | E5284_RS08840 | Not Available | Negative | 1889665 - 1890219 | 19053.4 |
| cobalamin reductase pdus | E5284_RS08845 | Not Available | Negative | 1890222 - 1891577 | 48505.6 |
| 1-propanol dehydrogenase pduq | E5284_RS08850 | Not Available | Negative | 1891574 - 1892686 | 39634.7 |
| coa-acylating propionaldehyde dehydrogenase pdup | E5284_RS08855 | Not Available | Negative | 1892697 - 1894082 | 48699.1 |
| two-domain cob(i)yrinic acid a,c-diamide adenosyltransferase pduo | E5284_RS08860 | Not Available | Negative | 1894079 - 1895086 | 36411.5 |
| eutn/ccml family microcompartment protein | E5284_RS08865 | Not Available | Negative | 1895095 - 1895370 | 9263.16 |
| microcompartment protein pdum | E5284_RS08870 | Not Available | Negative | 1895374 - 1895865 | 18126.3 |
| phosphate propanoyltransferase | E5284_RS08875 | Not Available | Negative | 1895862 - 1896494 | 22931.7 |
| bmc domain-containing protein | E5284_RS08880 | Not Available | Negative | 1896494 - 1896958 | 15978.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

