Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiosulfate reductase phsa | E5284_RS08785 | Not Available | Positive | 1879371 - 1881644 | 82789.5 |
| thiosulfate reductase electron transport protein phsb | E5284_RS08790 | Not Available | Positive | 1881659 - 1882237 | 21674.6 |
| thiosulfate reductase cytochrome b subunit | E5284_RS08795 | Not Available | Positive | 1882234 - 1883001 | 28437.6 |
| serine-type d-ala-d-ala carboxypeptidase dacd | E5284_RS08800 | Not Available | Positive | 1883152 - 1884324 | 43045.4 |
| dna gyrase inhibitor sbmc | E5284_RS08805 | Not Available | Positive | 1884449 - 1884916 | 17922.1 |
| fusc family protein | E5284_RS08810 | Not Available | Positive | 1885024 - 1886082 | 39934.9 |
| duf496 family protein | E5284_RS08815 | Not Available | Positive | 1886321 - 1886656 | 12976.7 |
| l-threonine kinase | E5284_RS08820 | Not Available | Negative | 1886698 - 1887564 | 31691.9 |
| acetate/propionate family kinase | E5284_RS08825 | Not Available | Negative | 1887659 - 1888873 | 43731.8 |
| propanediol utilization protein pduv | E5284_RS08830 | Not Available | Negative | 1888858 - 1889310 | 16266.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

