Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | E5284_RS13310 | Not Available | Negative | 2781529 - 2782128 | 22638.4 |
| Hypothetical protein | E5284_RS13315 | Not Available | Negative | 2782142 - 2783182 | 38752.0 |
| Rus holliday junction resolvase | E5284_RS13320 | Not Available | Negative | 2783179 - 2783538 | 13835.8 |
| Hypothetical protein | E5284_RS13325 | Not Available | Negative | 2783541 - 2783741 | 8145.56 |
| Hypothetical protein | E5284_RS13330 | Not Available | Negative | 2783870 - 2784115 | 9231.42 |
| Hypothetical protein | E5284_RS13335 | Not Available | Negative | 2784161 - 2784394 | 8786.45 |
| permease | E5284_RS13340 | Not Available | Negative | 2784681 - 2785772 | 38937.6 |
| arsr/smtb family transcription factor | E5284_RS13345 | Not Available | Positive | 2785873 - 2786169 | 10941.5 |
| glutaredoxin-dependent arsenate reductase | E5284_RS13350 | Not Available | Negative | 2786237 - 2786662 | 15686.1 |
| arsenite efflux transporter membrane subunit arsb | E5284_RS13355 | Not Available | Negative | 2786675 - 2787964 | 45649.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

