Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | E5284_RS08680 | Not Available | Positive | 1859221 - 1860033 | 32036.9 |
| acyltransferase family protein | E5284_RS08685 | Not Available | Positive | 1860078 - 1861121 | 39631.1 |
| nadp-dependent phosphogluconate dehydrogenase | E5284_RS08690 | Not Available | Positive | 1861244 - 1862650 | 51440.1 |
| udp-glucose 6-dehydrogenase | E5284_RS08695 | Not Available | Positive | 1862857 - 1864023 | 43547.1 |
| nad-dependent epimerase | E5284_RS08700 | Not Available | Negative | 1864086 - 1865090 | 37355.5 |
| lps o-antigen chain length determinant protein wzzb | E5284_RS08710 | Not Available | Positive | 1865441 - 1866424 | 35902.3 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | E5284_RS08715 | Not Available | Negative | 1866490 - 1867101 | 22798.2 |
| imidazole glycerol phosphate synthase subunit hisf | E5284_RS08720 | Not Available | Negative | 1867095 - 1867871 | 28296.9 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | E5284_RS08725 | Not Available | Negative | 1867853 - 1868590 | 26000.2 |
| imidazole glycerol phosphate synthase subunit hish | E5284_RS08730 | Not Available | Negative | 1868590 - 1869180 | 21483.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

