Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS08630 | Not Available | Positive | 1849159 - 1850328 | 44601.6 |
| glycosyltransferase | E5284_RS08635 | Not Available | Positive | 1850597 - 1851445 | 32140.9 |
| had family hydrolase | E5284_RS08640 | Not Available | Positive | 1851450 - 1852112 | 25431.7 |
| hypothetical protein | E5284_RS08645 | Not Available | Positive | 1852109 - 1852906 | 31333.2 |
| alpha-1,2-fucosyltransferase | E5284_RS08650 | Not Available | Positive | 1852919 - 1853719 | 30138.3 |
| gdp-mannose 4,6-dehydratase | E5284_RS08655 | Not Available | Positive | 1853739 - 1854857 | 41909.9 |
| gdp-l-fucose synthase family protein | E5284_RS08660 | Not Available | Positive | 1854861 - 1855826 | 36271.4 |
| gdp-mannose mannosyl hydrolase | E5284_RS08665 | Not Available | Positive | 1855829 - 1856329 | 19280.7 |
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | E5284_RS08670 | Not Available | Positive | 1856322 - 1857770 | 54498.2 |
| colanic acid biosynthesis phosphomannomutase cpsg | E5284_RS08675 | Not Available | Positive | 1857774 - 1859141 | 50306.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

