Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| colanic acid biosynthesis phosphomannomutase cpsg | E5284_RS08580 | Not Available | Positive | 1836560 - 1837930 | 50118.0 |
| undecaprenyl-phosphate glucose phosphotransferase | E5284_RS08585 | Not Available | Positive | 1837985 - 1839379 | 52756.9 |
| mop flippase family protein | E5284_RS08590 | Not Available | Positive | 1839382 - 1840860 | 53446.8 |
| colanic acid biosynthesis pyruvyl transferase wcak | E5284_RS08595 | Not Available | Positive | 1840926 - 1842206 | 47827.7 |
| colanic acid biosynthesis glycosyltransferase wcal | E5284_RS08600 | Not Available | Positive | 1842203 - 1843423 | 45007.9 |
| colanic acid biosynthesis protein wcam | E5284_RS08605 | Not Available | Positive | 1843435 - 1844829 | 50740.9 |
| galu regulator galf | E5284_RS08610 | Not Available | Positive | 1844995 - 1845888 | 32809.2 |
| flippase | E5284_RS08615 | Not Available | Positive | 1846259 - 1847548 | 47731.1 |
| sugar transferase | E5284_RS08620 | Not Available | Positive | 1847565 - 1848476 | 34899.0 |
| catb-related o-acetyltransferase | E5284_RS08625 | Not Available | Positive | 1848478 - 1849158 | 24757.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

