Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| colanic acid biosynthesis acetyltransferase wcab | E5284_RS08530 | Not Available | Positive | 1826944 - 1827432 | 17562.5 |
| colanic acid biosynthesis glycosyltransferase wcac | E5284_RS08535 | Not Available | Positive | 1827429 - 1828646 | 45061.2 |
| colanic acid polymerase wcad | E5284_RS08540 | Not Available | Positive | 1828621 - 1829838 | 45321.1 |
| colanic acid biosynthesis glycosyltransferase wcae | E5284_RS08545 | Not Available | Positive | 1829844 - 1830590 | 27554.2 |
| colanic acid biosynthesis acetyltransferase wcaf | E5284_RS08550 | Not Available | Positive | 1830600 - 1831154 | 20049.5 |
| gdp-mannose 4,6-dehydratase | E5284_RS08555 | Not Available | Positive | 1831179 - 1832300 | 41929.9 |
| gdp-l-fucose synthase family protein | E5284_RS08560 | Not Available | Positive | 1832303 - 1833268 | 36158.4 |
| gdp-mannose mannosyl hydrolase | E5284_RS08565 | Not Available | Positive | 1833271 - 1833750 | 18340.8 |
| colanic acid biosynthesis fucosyltransferase wcai | E5284_RS08570 | Not Available | Positive | 1833747 - 1834970 | 44864.4 |
| mannose-1-phosphate guanyltransferase | E5284_RS08575 | Not Available | Positive | 1834974 - 1836410 | 53158.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

