Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-3-methyladenine glycosylase 2 | E5284_RS08480 | Not Available | Positive | 1812303 - 1813172 | 31942.9 |
| diguanylate cyclase | E5284_RS08485 | Not Available | Negative | 1813140 - 1816469 | 124412.0 |
| uridine kinase | E5284_RS08490 | Not Available | Positive | 1816785 - 1817426 | 24494.6 |
| dctp deaminase | E5284_RS08495 | Not Available | Positive | 1817518 - 1818099 | 21138.3 |
| outer membrane assembly protein asma | E5284_RS08500 | Not Available | Positive | 1818126 - 1819979 | 68474.5 |
| terc family protein | E5284_RS08505 | Not Available | Negative | 1820028 - 1821614 | 59306.6 |
| polysaccharide export protein | E5284_RS08510 | Not Available | Positive | 1822270 - 1823409 | 41683.0 |
| low molecular weight protein-tyrosine-phosphatase wzb | E5284_RS08515 | Not Available | Positive | 1823415 - 1823864 | 16514.0 |
| tyrosine-protein kinase wzc | E5284_RS08520 | Not Available | Positive | 1823861 - 1826023 | 78870.0 |
| colanic acid biosynthesis glycosyltransferase wcaa | E5284_RS08525 | Not Available | Positive | 1826099 - 1826941 | 33066.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

