Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | E5284_RS08430 | Not Available | Negative | 1796495 - 1797208 | 26761.7 |
| duf4034 domain-containing protein | E5284_RS08435 | Not Available | Negative | 1797208 - 1799316 | 81631.3 |
| two-component system response regulator baer | E5284_RS08440 | Not Available | Negative | 1799396 - 1800118 | 27601.5 |
| two-component system sensor histidine kinase baes | E5284_RS08445 | Not Available | Negative | 1800115 - 1801518 | 52067.3 |
| mfs transporter | E5284_RS08450 | Not Available | Negative | 1801518 - 1802930 | 50877.5 |
| multidrug efflux rnd transporter permease subunit mdtc | E5284_RS08455 | Not Available | Negative | 1802927 - 1806007 | 111001.0 |
| mdtb/muxb family multidrug efflux rnd transporter permease subunit | E5284_RS08460 | Not Available | Negative | 1806008 - 1809130 | 111826.0 |
| mdta/muxa family multidrug efflux rnd transporter periplasmic adaptor subunit | E5284_RS08465 | Not Available | Negative | 1809130 - 1810377 | 44294.5 |
| type i toxin-antitoxin system ibs family toxin | E5284_RS08470 | Not Available | Positive | 1810656 - 1810715 | 2201.0 |
| molecular chaperone | E5284_RS08475 | Not Available | Negative | 1810814 - 1812166 | 49041.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

