Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS08165 | Not Available | Positive | 1745333 - 1746468 | 39802.9 |
| nadh oxidoreductase | E5284_RS08170 | Not Available | Negative | 1746793 - 1747761 | 35753.8 |
| hydroxylamine reductase | E5284_RS08175 | Not Available | Negative | 1747773 - 1749425 | 60172.2 |
| lysine exporter lyso family protein | E5284_RS08180 | Not Available | Negative | 1749580 - 1750479 | 32389.3 |
| aquaporin z | E5284_RS08185 | Not Available | Negative | 1750749 - 1751444 | 23793.4 |
| atp-dependent endonuclease | E5284_RS08190 | Not Available | Positive | 1751815 - 1753473 | 63506.0 |
| virk/ybjx family protein | E5284_RS08195 | Not Available | Negative | 1753470 - 1754417 | 36774.4 |
| macrolide transporter subunit maca | E5284_RS08200 | Not Available | Positive | 1754587 - 1755702 | 40813.6 |
| hypothetical protein | E5284_RS08420 | Not Available | Positive | 1794452 - 1794640 | 6874.45 |
| trna 5-hydroxyuridine modification protein yegq | E5284_RS08425 | Not Available | Negative | 1795013 - 1796374 | 51323.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

