Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| low-specificity l-threonine aldolase | E5284_RS08110 | Not Available | Negative | 1733853 - 1734854 | 36480.8 |
| ubiquinone-dependent pyruvate dehydrogenase | E5284_RS08115 | Not Available | Negative | 1734891 - 1736609 | 61891.0 |
| doxx family protein | E5284_RS08120 | Not Available | Positive | 1736761 - 1737195 | 15373.5 |
| fad-nad(p)-binding protein | E5284_RS08125 | Not Available | Negative | 1737270 - 1738886 | 60674.9 |
| nudix hydrolase | E5284_RS08130 | Not Available | Positive | 1739557 - 1740009 | 17364.6 |
| class i sam-dependent methyltransferase | E5284_RS08135 | Not Available | Positive | 1740166 - 1740870 | 26146.2 |
| gnat family n-acetyltransferase | E5284_RS08140 | Not Available | Positive | 1741001 - 1741441 | 16719.2 |
| hypothetical protein | E5284_RS08145 | Not Available | Positive | 1742533 - 1743411 | 31599.9 |
| hypothetical protein | E5284_RS08150 | Not Available | Positive | 1743743 - 1744240 | 18353.4 |
| hypothetical protein | E5284_RS08155 | Not Available | Positive | 1744637 - 1745281 | 25217.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

