Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine abc transporter atp-binding protein artp | E5284_RS08060 | Not Available | Negative | 1725557 - 1726285 | 26974.7 |
| lipoprotein | E5284_RS08065 | Not Available | Negative | 1726512 - 1727027 | 18839.1 |
| cold shock protein cspg | E5284_RS08070 | Not Available | Positive | 1727570 - 1727782 | 7720.12 |
| cold-shock protein | E5284_RS08075 | Not Available | Positive | 1727793 - 1727981 | 7097.53 |
| gnsa/gnsb family addiction module toxin | E5284_RS08080 | Not Available | Positive | 1728276 - 1728449 | 6615.22 |
| appa family phytase/histidine-type acid phosphatase | E5284_RS08085 | Not Available | Positive | 1728735 - 1730033 | 47615.2 |
| heavy metal-binding domain-containing protein | E5284_RS08090 | Not Available | Positive | 1730153 - 1730476 | 11453.7 |
| n-acetylmuramoyl-l-alanine amidase | E5284_RS08095 | Not Available | Positive | 1730473 - 1731303 | 30832.0 |
| nad-dependent epimerase/dehydratase family protein | E5284_RS08100 | Not Available | Negative | 1731300 - 1732313 | 38039.6 |
| sdr family oxidoreductase | E5284_RS08105 | Not Available | Negative | 1732412 - 1733842 | 53548.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

