Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Gp60 | E5284_RS13260 | Not Available | Negative | 2776454 - 2776816 | 13974.4 |
| hypothetical protein | E5284_RS13265 | Not Available | Negative | 2777249 - 2777452 | 7015.43 |
| Hypothetical protein | E5284_RS23315 | Not Available | Negative | 2777604 - 2778287 | 25748.9 |
| Endopeptidase | E5284_RS13275 | Not Available | Negative | 2778354 - 2778821 | 16829.1 |
| Lysin | E5284_RS13280 | Not Available | Negative | 2778818 - 2779366 | 19685.9 |
| Holin | E5284_RS13285 | Not Available | Negative | 2779338 - 2779616 | 10120.1 |
| hypothetical protein | E5284_RS13290 | Not Available | Positive | 2779875 - 2780168 | 10939.9 |
| Putative holin | E5284_RS13295 | Not Available | Negative | 2780305 - 2780412 | 3534.21 |
| Hypothetical protein | E5284_RS13300 | Not Available | Negative | 2780505 - 2780693 | 6945.14 |
| flxa-like family protein | E5284_RS13305 | Not Available | Positive | 2780837 - 2781211 | 13510.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

