Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS07960 | Not Available | Negative | 1706403 - 1706762 | 12787.3 |
| hypothetical protein | E5284_RS07965 | Not Available | Negative | 1706771 - 1706998 | 8631.06 |
| hydroxyethylthiazole kinase | E5284_RS07970 | Not Available | Positive | 1707922 - 1708710 | 27326.8 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | E5284_RS07975 | Not Available | Positive | 1708707 - 1709507 | 28617.2 |
| gntr family transcriptional regulator | E5284_RS07980 | Not Available | Positive | 1709560 - 1710306 | 28199.7 |
| pfkb family carbohydrate kinase | E5284_RS07985 | Not Available | Negative | 1710280 - 1711245 | 34415.1 |
| adp-ribosylglycohydrolase family protein | E5284_RS07990 | Not Available | Negative | 1711242 - 1712246 | 35522.5 |
| nucleoside permease | E5284_RS07995 | Not Available | Negative | 1712243 - 1713520 | 47380.0 |
| class i fructose-bisphosphate aldolase | E5284_RS08000 | Not Available | Positive | 1713774 - 1714826 | 38011.3 |
| mandelate racemase family protein | E5284_RS08005 | Not Available | Positive | 1715086 - 1716240 | 42482.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

