Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component system response regulator btsr | E5284_RS07910 | Not Available | Positive | 1695462 - 1696181 | 27369.4 |
| duf1456 family protein | E5284_RS07915 | Not Available | Positive | 1696228 - 1696698 | 18034.9 |
| methionine--trna ligase | E5284_RS07920 | Not Available | Negative | 1696776 - 1698809 | 76180.7 |
| iron-sulfur cluster carrier protein apbc | E5284_RS07925 | Not Available | Positive | 1698973 - 1700082 | 39831.4 |
| duf2574 family protein | E5284_RS07930 | Not Available | Positive | 1700347 - 1700628 | 9883.99 |
| fimbrial protein yehd | E5284_RS07935 | Not Available | Positive | 1700907 - 1701458 | 19254.4 |
| fimbria/pilus periplasmic chaperone | E5284_RS07940 | Not Available | Positive | 1701513 - 1702196 | 25094.7 |
| fimbrial biogenesis outer membrane usher protein | E5284_RS07945 | Not Available | Positive | 1702209 - 1704689 | 91871.9 |
| fimbrial protein | E5284_RS07950 | Not Available | Positive | 1704695 - 1705723 | 37415.7 |
| rcnb family protein | E5284_RS07955 | Not Available | Negative | 1705794 - 1706126 | 12191.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

