Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine endopeptidase | E5284_RS07860 | Not Available | Positive | 1683455 - 1684390 | 33950.5 |
| d-lactate dehydrogenase | E5284_RS07865 | Not Available | Negative | 1684455 - 1686167 | 64207.6 |
| beta-glucosidase bglx | E5284_RS07870 | Not Available | Positive | 1686400 - 1688697 | 83488.7 |
| abc transporter substrate-binding protein | E5284_RS07875 | Not Available | Positive | 1688927 - 1689844 | 32554.1 |
| abc transporter permease | E5284_RS07880 | Not Available | Positive | 1689878 - 1691026 | 40437.6 |
| abc transporter atp-binding protein | E5284_RS07885 | Not Available | Positive | 1691019 - 1691966 | 35050.3 |
| abc transporter permease | E5284_RS07890 | Not Available | Positive | 1691950 - 1692681 | 25240.9 |
| protein yoho | E5284_RS07895 | Not Available | Negative | 1692662 - 1692769 | 3527.66 |
| hth-type transcriptional regulator mlra | E5284_RS07900 | Not Available | Negative | 1692822 - 1693553 | 28067.9 |
| sensor histidine kinase | E5284_RS07905 | Not Available | Positive | 1693780 - 1695465 | 61986.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

