Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane permeability protein sana | E5284_RS07810 | Not Available | Negative | 1675173 - 1675892 | 27318.4 |
| cytidine deaminase | E5284_RS07815 | Not Available | Negative | 1676098 - 1676982 | 31648.8 |
| cidb/lrgb family autolysis modulator | E5284_RS07820 | Not Available | Negative | 1677130 - 1677825 | 24428.1 |
| cida/lrga family protein | E5284_RS07825 | Not Available | Negative | 1677822 - 1678220 | 14673.8 |
| trna dihydrouridine(16) synthase dusc | E5284_RS07830 | Not Available | Positive | 1678435 - 1679373 | 34728.9 |
| small membrane protein yohp | E5284_RS23375 | Not Available | Negative | 1679430 - 1679513 | 3106.31 |
| class i sam-dependent methyltransferase | E5284_RS07840 | Not Available | Negative | 1679583 - 1680317 | 27194.4 |
| multidrug resistance outer membrane protein mdtq | E5284_RS07845 | Not Available | Positive | 1680487 - 1681926 | 52078.5 |
| deda family protein | E5284_RS07850 | Not Available | Negative | 1681945 - 1682523 | 21400.0 |
| yip1 family protein | E5284_RS07855 | Not Available | Positive | 1682687 - 1683274 | 21604.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

