Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-formylglutathione hydrolase | E5284_RS07760 | Not Available | Negative | 1664087 - 1664923 | 31260.0 |
| gtp cyclohydrolase i fole | E5284_RS07765 | Not Available | Positive | 1665246 - 1665914 | 24893.1 |
| duf418 domain-containing protein yeib | E5284_RS07770 | Not Available | Positive | 1665928 - 1667085 | 43212.0 |
| hth-type transcriptional regulator gals | E5284_RS07775 | Not Available | Positive | 1667230 - 1668252 | 36790.5 |
| galactose/glucose abc transporter substrate-binding protein mglb | E5284_RS07780 | Not Available | Positive | 1668549 - 1669547 | 35771.7 |
| galactose/methyl galactoside abc transporter atp-binding protein mgla | E5284_RS07785 | Not Available | Positive | 1669619 - 1671139 | 56524.7 |
| galactose/methyl galactoside abc transporter permease mglc | E5284_RS07790 | Not Available | Positive | 1671155 - 1672165 | 35592.4 |
| nad-dependent dihydropyrimidine dehydrogenase subunit prea | E5284_RS07795 | Not Available | Negative | 1672227 - 1673462 | 44880.1 |
| nad(p)-dependent oxidoreductase | E5284_RS07800 | Not Available | Negative | 1673456 - 1674697 | 44560.6 |
| duf2542 family protein | E5284_RS07805 | Not Available | Negative | 1674931 - 1675170 | 9334.58 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

