Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ykgj family cysteine cluster protein | E5284_RS07710 | Not Available | Positive | 1651430 - 1651684 | 8932.97 |
| sugar efflux transporter setb | E5284_RS07715 | Not Available | Negative | 1651681 - 1652862 | 42678.6 |
| fused pts fructose transporter subunit iia/hpr protein | E5284_RS07720 | Not Available | Positive | 1653231 - 1654361 | 39713.2 |
| 1-phosphofructokinase | E5284_RS07725 | Not Available | Positive | 1654361 - 1655299 | 33784.7 |
| pts fructose transporter subunit iibc | E5284_RS07730 | Not Available | Positive | 1655316 - 1657001 | 57470.4 |
| deoxyribonuclease iv | E5284_RS07735 | Not Available | Negative | 1657065 - 1657922 | 31307.9 |
| yeih family protein | E5284_RS07740 | Not Available | Negative | 1658072 - 1659121 | 36826.4 |
| dna-binding transcriptional regulator yeie | E5284_RS07745 | Not Available | Positive | 1659253 - 1660122 | 32259.1 |
| lysine-specific permease | E5284_RS07750 | Not Available | Positive | 1660283 - 1661758 | 54029.4 |
| ligand-gated channel protein | E5284_RS07755 | Not Available | Negative | 1661826 - 1663811 | 73029.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

