Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional murein dd-endopeptidase/murein ld-carboxypeptidase | E5284_RS07660 | Not Available | Negative | 1638999 - 1639568 | 21117.1 |
| phosphatase pap2 family protein | E5284_RS07665 | Not Available | Negative | 1639982 - 1640695 | 26716.6 |
| cobw family gtp-binding protein | E5284_RS07670 | Not Available | Negative | 1640729 - 1641715 | 36054.3 |
| mannitol dehydrogenase family protein | E5284_RS07675 | Not Available | Negative | 1641835 - 1643301 | 54305.2 |
| mannonate dehydratase | E5284_RS07680 | Not Available | Positive | 1643504 - 1644694 | 44755.1 |
| plp-dependent aminotransferase family protein | E5284_RS07685 | Not Available | Negative | 1644741 - 1646213 | 54885.3 |
| pentaheme c-type cytochrome torc | E5284_RS07690 | Not Available | Positive | 1646380 - 1647507 | 41485.1 |
| trimethylamine-n-oxide reductase tora | E5284_RS07695 | Not Available | Positive | 1647523 - 1650021 | 92737.9 |
| molecular chaperone tord | E5284_RS07700 | Not Available | Positive | 1650011 - 1650643 | 24417.2 |
| elongation factor p-like protein yeip | E5284_RS07705 | Not Available | Negative | 1650700 - 1651272 | 21370.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

