Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiol:disulfide interchange protein dsbe | E5284_RS07560 | Not Available | Positive | 1616772 - 1617329 | 20732.0 |
| cytochrome c-type biogenesis protein ccmh | E5284_RS07565 | Not Available | Positive | 1617326 - 1618375 | 39191.1 |
| nitrate/nitrite response regulator protein narp | E5284_RS07570 | Not Available | Negative | 1618477 - 1619124 | 23606.6 |
| nitric-oxide reductase large subunit | E5284_RS07575 | Not Available | Negative | 1619395 - 1621659 | 84443.5 |
| bor family protein | E5284_RS07580 | Not Available | Negative | 1621982 - 1622272 | 10406.8 |
| Trna-pro | Not Available | Not Available | Positive | 1622639 - 1622715 | Not Available |
| lps biosynthesis-modulating metalloenzyme yejm | E5284_RS07590 | Not Available | Negative | 1622789 - 1624549 | 67093.5 |
| yejl family protein | E5284_RS07595 | Not Available | Negative | 1624581 - 1624808 | 8330.93 |
| nucleoid-associated protein yejk | E5284_RS07600 | Not Available | Positive | 1624943 - 1625950 | 37824.6 |
| hypothetical protein | E5284_RS07605 | Not Available | Positive | 1625978 - 1626598 | 23730.9 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

