Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Gp9 | E5284_RS13210 | Not Available | Negative | 2768502 - 2768852 | 13106.7 |
| Gp8 | E5284_RS13215 | Not Available | Negative | 2768849 - 2769166 | 11922.2 |
| Gp7 | E5284_RS13220 | Not Available | Negative | 2769147 - 2769518 | 12795.5 |
| Major capsid head protein precursor | E5284_RS13225 | Not Available | Negative | 2769616 - 2770902 | 46163.2 |
| Putative head maturation protease | E5284_RS13230 | Not Available | Negative | 2770977 - 2771897 | 32921.4 |
| Putative portal protein | E5284_RS13235 | Not Available | Negative | 2771934 - 2773193 | 46808.4 |
| Gp3 | E5284_RS13240 | Not Available | Negative | 2773193 - 2773372 | 5950.52 |
| Terminase large subunit | E5284_RS13245 | Not Available | Negative | 2773366 - 2775093 | 64966.1 |
| Terminase small subunit | E5284_RS13250 | Not Available | Negative | 2775090 - 2775587 | 17977.9 |
| Hypothetical protein | E5284_RS13255 | Not Available | Positive | 2775803 - 2776318 | 19298.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

